PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 213aa    MW: 23776.7 Da    PI: 4.4916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38012.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.8e-0645851055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                ++R +++ ++f  L   +P       kK +K +iL  A  Y+k+Lq
  KHN38012.1 45 KKRQRELTERFLALSATIPGF-----KKTDKTSILANASSYVKQLQ 85
                89******************8.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.223584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-64290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-114597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1045100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.51E-64589No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEESGENWPS DSYLDDFVND DLGFDDEEFG SEDDSFSGMG ETDRKKRQRE LTERFLALSA  60
TIPGFKKTDK TSILANASSY VKQLQQRVRE LEQLQEVQSN VTSNEGATSS CEVNSSSNDY  120
YCGGGGPNEI LPEVKVRVLQ KEVLIIIHCE KHKGIMLKIL SQLENVNLSI VNSSVLRFGK  180
STLDITIVAQ MGEGYKMTVD ELVKTLRVAI LTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0918630.0BT091863.1 Soybean clone JCVI-FLGm-9A19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237930.11e-156uncharacterized protein LOC100527052
TrEMBLA0A0B2S1L01e-157A0A0B2S1L0_GLYSO; Transcription factor bHLH19-like protein
STRINGGLYMA08G23020.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1460568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.18e-30bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]